At what temperature does hybridization of primers occur in PCR?
Click to see answer
55-65°C.
Click to see question
At what temperature does hybridization of primers occur in PCR?
55-65°C.
What is the purpose of RFLP analysis?
To observe whether an individual carries a mutant gene for a hereditary disease.
How do hybridization probes assist in DNA analysis?
They allow the production of sufficient amounts of recombinant DNA for further analysis.
Can one miRNA regulate multiple polypeptides?
Yes, one miRNA can block translation of several different polypeptides.
What is the association between homocysteine and cardiovascular disease?
Increased concentration of homocysteine in blood is associated with a higher risk of atherosclerosis and thrombosis, leading to cardiovascular disease.
What are some important oxidative modifications of proteins during aging?
Formation of dityrosines, oxidation of tryptophan, and reaction of free amino groups of lysine residues with aldehydes.
What is cloned DNA used to produce?
Hormones (e.g., insulin), therapeutic proteins (e.g., antibodies), and vaccines.
What is gene manipulation?
The use of biotechnology to produce different bioproducts by introducing new characteristics into recipient organisms.
What is the significance of the 5‘-UTR and 3‘-UTR in translation regulation?
They contain sequences that serve as binding sites for regulatory proteins, influencing translation efficiency.
How does binding to the 3‘-UTR affect translation?
It increases the efficiency of translation mainly due to increased stability of mRNA.
What is the role of labeled antibodies in Western blotting?
To visualize the protein of interest.
What types of viruses can be used in gene therapy?
Retrovirus, adenovirus, lentivirus, and herpes simplex virus.
What is the first step in preparing a DNA library?
Cutting the investigated DNA into fragments using restriction endonuclease.
How is sickle cell anemia diagnosed?
Using restriction fragment length polymorphism (RFLP).
How is probe-target hybridization detected in DNA arrays?
By detecting and quantifying fluorophore-labeled targets.
What is the purpose of recombinant DNA technology?
To introduce new, favorable characteristics into organisms, such as resistance to insect attack.
What is DNA fingerprinting primarily used for in forensic medicine?
Identification of criminals, murder victims, or for paternity tests.
What are the two methods developed for DNA sequencing?
Maxam and Gilbert method, and Sanger’s method.
How can the synthesis rate of a particular protein change?
It can change quickly due to alterations in metabolism and physiological conditions, influenced by regulatory protein binding.
What is in situ hybridization used for?
Detection of DNA or RNA sequences directly in investigated tissue.
What is the purpose of the labeled hybridization probe in in situ hybridization?
To target the sequence of interest.
What is dephosphorylation?
The removal of a phosphate group from proteins, catalyzed by phosphatases.
What is the purpose of hybridization probes?
To identify DNA library clones containing the sequence of interest.
What happens during the DNA synthesis step of PCR?
The mixture is heated to 72°C for elongation of DNA from primers using thermostable DNA polymerase.
What is the primary use of recombinant DNA technology in therapy?
Preparation of peptides, proteins, antisense oligonucleotides, RNA interference, and gene therapy.
What is the role of miRNA in translation regulation?
Binding of miRNA to target mRNA leads to quick elimination by ribonucleases and blocks translation elongation.
Which disease is associated with a deletion of the UUU codon in the CFTR gene?
Cystic fibrosis.
What is the role of miRNA and siRNA in RNA interference?
They direct enzyme complexes to degrade mRNA molecules, decreasing their activity and preventing translation.
In what fields is in situ hybridization used?
Prenatal diagnostics and oncology.
What role do eIF-4E and eIF-4G play in translation initiation?
They bind to the CAP and internal ribosomal entry sites (IRES), which is essential for the initiation of translation.
How does Northern blotting differ from Southern blotting?
Northern blotting is used for the detection of RNA, while Southern blotting is for DNA.
What information does DNA sequencing provide?
The sequence of nucleotides in DNA.
What must an expression vector contain?
Replication origin and promoter sequences.
What is a clone in the context of recombinant DNA?
A population of host cells containing identical recombinant DNA.
What does the term 'DNA library' refer to?
A collection of DNA fragments from one organism that have been cloned into vectors for identification and isolation.
What is a genomic DNA library?
A collection of cloned DNA fragments from the whole genome of a cell.
What is the first step in in situ hybridization?
Fixing the tissue to avoid chemical changes.
What methods can be used to identify the sequence of a gene of interest?
Hybridization probes or polymerase chain reaction (PCR).
What is non-enzymatic glycation of proteins?
The reaction of plasma proteins with glucose, responsible for chronic complications of diabetes.
How can posttranslational modifications affect eIF-4E and eIF-4G?
They can change the level of binding properties of these initiation factors, thus altering the rate of translation initiation.
What effect does binding to the 5‘-UTR have on translation?
It is associated with inhibition of translation.
What is the purpose of antisense oligonucleotides?
To inhibit the synthesis of a target protein by reducing the level of specific mRNA.
What is the basis of the Maxam and Gilbert method?
Chemical cleavage of DNA.
What are the three kinds of DNA libraries?
Genomic DNA library, Chromosome DNA library, and cDNA libraries.
What are some risks associated with gene therapy?
Introduction of foreign objects, potential viral complications, and chance of inducing mutations.
What is the significance of ATP in the ubiquitin-proteasome pathway?
The attachment of ubiquitin to target proteins is ATP-dependent.
What is the first mechanism of eukaryotic translation regulation?
Phosphorylation of eIF-2α by different protein kinases, leading to inhibition of translation initiation.
What are the main steps involved in Southern blotting?
Cutting genomic DNA, separating fragments by gel electrophoresis, transferring to a membrane, and hybridization with a probe.
What technique can be used for mRNA detection in oncology?
In situ hybridization.
What is Southern blotting used for?
To detect mutations and DNA insertions or deletions.
What methods are used for prenatal diagnosis?
PCR or in situ hybridization.
What is RNA interference (RNAi)?
A method of disease treatment that suppresses gene expression using double-stranded RNA.
What is a cDNA library?
A collection of cloned DNA sequences that are transcribed into mRNA in a particular cell or tissue.
What causes severe immuno-deficiency syndrome?
Mutation of the gene coding for adenine deaminase.
What are some other chemical modifications of polypeptide chains?
Methylation, acetylation, and hydroxylation.
What is Southern blotting used for?
Detection of DNA sequences.
What are some applications of PCR in human medicine?
Detection of mutations, molecular classification of tumors, identification of viruses or bacteria, microbiological screening of food, and DNA amplification in forensic medicine.
What are prion diseases?
Neurodegenerative disorders associated with unusual post-translational modifications of prions.
What is recombinant DNA?
DNA composed of at least two parts from different organisms that can be replaced in a host organism.
What is the role of DNA ligase in DNA technology?
To attach the DNA vector to the foreign DNA.
What is DNA cloning?
A technique that makes many identical copies of a piece of DNA, such as a gene.
Give examples of proteins that undergo proteolytic activation.
Pepsinogen → pepsin, fibrinogen → fibrin, prothrombin → thrombin.
What is ubiquitin?
A small peptide that labels proteins for degradation by the proteasome complex.
What is phosphorylation?
The addition of a phosphate group to proteins, often catalyzed by kinases.
What is one practical application of recombinant DNA technology in medicine?
Diagnostics of human diseases.
What is the first step in gene manipulation?
Isolation of DNA fragments from the donor.
What is the purpose of Western blotting?
To detect proteins using labeled antibodies.
What can DNA sequencing be used for?
Localization of regulatory and gene sequences, comparison of homologous genes, and identification of mutations.
What is gene therapy?
The treatment of inherited diseases by delivering a normal copy of a defective gene.
What is proteolytic activation of proteins?
The conversion of inactive polypeptides into active proteins through proteolytic cutting.
What is the role of the 26S proteasome complex?
It removes aged and damaged proteins from the cell through proteolytic degradation.
How are recombinant molecules introduced into a host bacterium?
Through a process called transformation.
What is the first step in the PCR process?
Thermal denaturation, where primers are heated to 95°C to denature dsDNA into single strands.
What is a vector genome?
A DNA molecule that represents a small segment of DNA containing all signals necessary for replication.
What are probes in the context of DNA analysis?
Single stranded sequences of DNA or RNA that hybridize with complementary sequences of investigated DNA or RNA.
What happens to normal prions in prion diseases?
Normal prions with dominant α-helix structure can misfold into aberrant prions with β-pleated sheets, leading to neurodegeneration.
What is the first step in Southern blotting?
Cutting genomic DNA by restriction endonuclease into discrete fragments.
How do antisense oligonucleotides work?
They bind to complementary coding regions on mRNA, forming RNA-DNA heteroduplexes that are cleaved by RNAse-H.
What is the role of ddNTPs in Sanger’s method?
They prevent the addition of further dNTPs, terminating DNA chain synthesis.
What are the three steps involved in one cycle of PCR?
Denaturation, annealing, and extension.
How does inadequate proteasome function relate to neurodegenerative diseases?
It can lead to the accumulation of aberrant proteins, contributing to diseases like Alzheimer’s and Parkinson’s.
What is a DNA array?
A high throughput method used to determine the expression level of many genes or mutations simultaneously.
What does RFLP stand for?
Restriction Fragment Length Polymorphism.
What disease can be diagnosed using RFLP?
Sickle cell anemia.
What is the basis of DNA fingerprinting?
The presence of variable number of tandem repeats (VNTR).
How is a plasmid used in DNA cloning?
The target gene is inserted into a plasmid, which is then introduced into bacteria via transformation.
Which disease is diagnosed by detecting an unusual number of CAG codons?
Huntington's disease.
What is immunocytochemistry used for?
Detection and visualization of proteins or other antigens in cells using antibodies.
What is glycated hemoglobin used for?
Long-term control of glycemia (blood glucose concentration).
How does aging affect protein modifications?
Aging is associated with the slow accumulation of oxidized proteins, mainly in the extracellular matrix.
What are restriction endonucleases?
DNA cutting enzymes used to cut fragments for the production of recombinant DNA.
What was a significant use of hybridization probes?
For identification of DNA library clones containing the sequence of interest.
What are post-translational modifications?
Covalent modifications that significantly impact the function of modified proteins.
What does PCR stand for and what is its use?
Polymerase Chain Reaction; used for detecting DNA insertions, deletions, and gene amplification.
What hereditary disease can be cured with ex vivo gene therapy?
Severe immuno-deficiency syndrome.
How do antibodies function in immunocytochemistry?
They specifically recognize the target of interest and are linked to a reporter.
What is the consequence of prion misfolding?
It leads to the formation of protein aggregates that induce neuronal death and consequent neurodegeneration.
What is required for the normal gene to be effective in gene therapy?
It must be inserted into a specific vector for incorporation into the genomic DNA.
What is the polymerase chain reaction (PCR)?
A method based on repetitive DNA synthesis using thermostable DNA polymerase and specific primers.
What enzyme is used to seal DNA fragments into vectors?
DNA ligase.
What is the role of protein kinase A?
It is activated by cAMP and plays a role in signal transduction.
What is the key feature of Sanger’s method?
It uses labeled di-deoxy-nucleotides (ddNTPs) in addition to normal deoxynucleotides.
What are the two types of small RNA molecules involved in RNA interference?
MicroRNA (miRNA) and small interfering RNA (siRNA).
What is in situ hybridization used for?
To detect DNA or RNA sequences directly in tissue.
What type of genetic inheritance is sickle cell anemia?
Autosomal recessive disease.